Installation

We recommend users to directly clone our stable main branch and set multiHIVE as the working directory and install the following dependencies in a new conda environment python>=3.11:

conda create -n multiHIVE python==3.11
git clone https://github.com/Zafar-Lab/multiHIVE.git
pip install scvi-tools==1.3.0
pip install scanpy==1.11.0
pip install scikit-misc==0.3.1

Or install directly via pip

[TODO] pip install multiHIVE